This workflow is maintained and distributed through the ICMM GitHub page. The source-code has been versioned according to publications and relevant checkpoints, and can be downloaded via a git clone command:

git clone https://github.com/Tuks-ICMM/Population-Structure-Workflow.git

If you would like to clone a specific version, versions are declared and maintained via the repositories releases page. To access a version, users can clone the repository, and perform a checkout command, providing the version to checkout:

git clone https://github.com/Tuks-ICMM/Population-Structure-Workflow.git
git checkout tags/<release_version>

Dependencies

This workflow is built and powered using a python-based framework for workflow management. In addition, we make use of several underlying bioinformatics tools and third-party command-line programs to perform some steps in the analysis (For more information, see the methodology page):

  • Plink-2

This work is licensed under a Creative Commons Attribution 4.0 International License.. This project is managed by the Institute for Cellular and Molecular Medicine at the University of Pretoria.

View this page on GitHub.