Workflow
A more detailed explination of the workflow and its steps.
Reference Genome Configuration
This section explains the construction of this workflow in detail, to encourage reproducible and iterative development of the analysis this workflow conducts.
Data
We describe the input data required in order to run this workflow in detail, describing the requested dataset formats, optimizations and metadata supported and requested.
Methodology
Each step in the workflow is discussed in detail, with a summary of each command performed and an explanation for each argument passed to the underlying software.